Term: adapters (adapters)
Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters
URI: MIXS:0000048
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use adapters.
Name | Description | Checklist/Extension |
---|---|---|
Agriculture | A collection of terms appropriate when sequencing samples obtained in an agri... | Extension |
MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
Misag | Minimum Information About a Single Amplified Genome | Checklist |
MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
MimarksS | Minimal Information about a Marker Specimen: survey | Checklist |
Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
Mims | Metagenome or Environmental | Checklist |
Properties
- Range: String
- Cardinality: 0..1
Examples
Value |
---|
AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT |
Annotations
- Expected_value: adapter A and B sequence
LinkML Source
name: adapters
annotations:
Expected_value:
tag: Expected_value
value: adapter A and B sequence
description: Adapters provide priming sequences for both amplification and sequencing
of the sample-library fragments. Both adapters should be reported; in uppercase
letters
title: adapters
examples:
- value: AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
string_serialization: '{dna};{dna}'
slot_uri: MIXS:0000048
alias: adapters
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string