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Term: geographic location (country and/or sea,region) (geo_loc_name)

The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)

URI: MIXS:0000010

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use geo_loc_name.

Name Description Checklist/Extension
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimarksC Minimal Information about a Marker Specimen: specimen Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
MimarksS Minimal Information about a Marker Specimen: survey Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
Mims Metagenome or Environmental Checklist

Properties

  • Range: String

  • Cardinality: 1..1

  • Structured pattern: ^{text}: {text}, {text}$

  • Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
USA: Maryland, Bethesda

LinkML Source

name: geo_loc_name
description: The geographical origin of the sample as defined by the country or sea
  name followed by specific region name. Country or sea names should be chosen from
  the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- geographic
- location
slot_uri: MIXS:0000010
alias: geo_loc_name
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- SymbiontAssociated
range: string
required: true
pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
structured_pattern:
  syntax: '^{text}: {text}, {text}$'
  interpolated: true
  partial_match: true